What about allowing big work units, then? The reason I ask is because I remember reading a warning about using those, particularly in combination.
EDIT: From the folding@home configuration FAQ.
-advmethods This flag gives "advanced methods" work units (WUs). These work units will inherently be less stable than regular WUs. The donor should monitor the client regularly and report unusual situations to the folding community forum (
http://forum.folding-community.org).
SETTINGS UNIQUE TO THE VERSION 5.0x CLIENT
The configuration setting Accept WUs>5MB (also known as the "BigWU" setting) allows for large WUs (large in either download size, upload size, or RAM requirements). Note that these work units are the most demanding work units in download and/or RAM. In the console client, this is set through the -config flag. You will be asked "Allow receipt of work unit assignments and return of work results greater than 5MB in size (such units may have large memory demands)". In the GUI client, this is set through the config panel. We do not recommend the BigWU setting for clients with modems, due to the large filesize involved (and greater potential for transmission problems and WU loss).
Combining advanced methods and BigWU: this combination unlocks the most demanding work units, including QMD and very large RAM and/or download WUs. We do not suggest this setting for a machine which is not readily administered, as this setting is the most demanding and would likely require more donor intervention than any other setting. To compensate for this, these WUs have a large bonus. The donor should monitor the client regularly and report unusual situations to the folding community forum (
http://forum.folding-community.org). THIS COMBINATION SHOULD BE ONLY USED WITH EXTREME CAUTION AND FAMILIARITY WITH FAH -- THERE WILL BE HUGE DEMANDS ON THE CLIENT MACHINE, INCLUDING (BUT NOT LIMITED TO) RAM, HARD DRIVE, NETWORK CONNECTION. Bonus points are awarded due to these increased demands.
EDIT #2: An easy way to check for the big work units is to look at the client.cfg file. It will have a line with "bigpackets=yes" in it. Advanced methods, at least in Windows, you enable by altering the registry entry and adding -advmethods to the end of it. I assume you would alter whatever the equivalent method of starting the client in Linux is.
EDIT #3: sleewa, you probably want to rerun the configuration, answer yes to "change advanced options" and then answer yes to "request work units without deadlines". Oh, and for the love of God,
do not answer yes to "Allow receipt of work unit assignments and return of work results greater than 5MB in size (such units may have large memory demands". I -think- that's the combination of options for you to get the lighter mode genome folding work units instead, which don't take long at all. The side effect of that is that they are not worth many points at all.